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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_303594_303969_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
303594 - 303969
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACAC
Flanking Amino Acid:
YFISGLLLCVGVFSMYFHMT
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82.8
0.74
0.8
76.6
32.1
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
55.1
0.14
1.8
72.17
38.7

Associated Gene:

Gene:
ACER1
Ensembl Gene ID:
ENSAPLG00000003845
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003932
300647 - 313424
12778