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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3040787_3041292_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3040787 - 3041292
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
HMIIRAPDFLSTFHIRI*
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
CIB3
Ensembl Gene ID:
ENSAPLG00000008953
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009321
3040765 - 3045023
4259