About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_304085_310822_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
304085 - 310822
Intron Length:
6738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CCTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATCAT
U12 Branch Point Sequence:
ATACGCTGAATG
Flanking Amino Acid:
STVIAEYYNTISNVSFFILS
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
70.1
35.6
Major BPS
64.2
0.35
1.2
65.8
41
Major PPT
84.3
0.77
0.8
75.9
38
Minor 5ss
33.5
-1.9
2.7
44.7
42.7
Minor BPS
47.3
-0.3
1.9
53.34
41.3

Associated Gene:

Gene:
ACER1
Ensembl Gene ID:
ENSAPLG00000003845
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003932
300647 - 313424
12778