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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3041489_3042297_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3041489 - 3042297
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTACATTGAATT
Flanking Amino Acid:
LKAYYAFKIYDFNNDDYICK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79.6
0.67
0.9
76.3
32.4
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
53.6
0.19
1.6
72.5
38.1

Associated Gene:

Gene:
CIB3
Ensembl Gene ID:
ENSAPLG00000008953
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009321
3040765 - 3045023
4259