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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3042926_3044952_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3042926 - 3044952
Intron Length:
2027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAAGA
5'SS Class:
major
3'SS Sequence:
CTTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TGTTCCCTAAAC
Flanking Amino Acid:
DAYQVQNKLNGLFYRYRDLA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
64.3
41.7
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
87.4
0.84
0.7
85.3
27.7
Minor 5ss
38.5
-1.3
2.8
40.3
45.6
Minor BPS
65.9
0.48
1.8
77.85
37

Associated Gene:

Gene:
CIB3
Ensembl Gene ID:
ENSAPLG00000008953
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009321
3040765 - 3045023
4259