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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3046624_3046822_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3046624 - 3046822
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
CCACTGTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CGGGCGCTGACT
Flanking Amino Acid:
GSGAGLGAGKRKKKKAKDKA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.5
40.3
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
72.7
0.51
0.9
68.8
37
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
41.3
-0.6
2.3
56.11
46.4

Associated Gene:

Gene:
FAM32A
Ensembl Gene ID:
ENSAPLG00000009058
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009418
3046547 - 3047369
823