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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3048401_3049018_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3048401 - 3049018
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATAT
Flanking Amino Acid:
AVYVLDLKGKVLICRNYRGD
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.7
84.9
28.8
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
65.1
0.55
1.6
84.45
36.3

Associated Gene:

Gene:
AP1M1
Ensembl Gene ID:
ENSAPLG00000009067
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009484
3048359 - 3056957
8599