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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3049176_3049540_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
3049176 - 3049540
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CGGCCTTTATCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTCCTGAACG
Flanking Amino Acid:
FMWIKHNNLYLVATSKKNAC
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
67.8
0.4
1
65.8
39.7
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
75.4
0.66
1.5
77.65
38.8

Associated Gene:

Gene:
AP1M1
Ensembl Gene ID:
ENSAPLG00000009067
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009484
3048359 - 3056957
8599