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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3049609_3050187_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3049609 - 3050187
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
TTTTGTTTTTCT
Flanking Amino Acid:
VFSFLYKVVQVFSEYFKELE
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
86.4
0.82
0.7
84.9
30
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
41.5
-0.5
3.8
79.44
43

Associated Gene:

Gene:
AP1M1
Ensembl Gene ID:
ENSAPLG00000009067
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009484
3048359 - 3056957
8599