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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3050319_3051320_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3050319 - 3051320
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TGTGGTTGTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTCACCT
Flanking Amino Acid:
PQTTDSKILQEYITQEGHKL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
59.7
0.22
1.2
59.1
45.5
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
54.8
0.23
1.8
76.21
40.7

Associated Gene:

Gene:
AP1M1
Ensembl Gene ID:
ENSAPLG00000009067
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009484
3048359 - 3056957
8599