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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3054816_3055285_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3054816 - 3055285
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
ACTAACATAGCA
Flanking Amino Acid:
IPYFTTSGIQVRYLKIIEKS
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
79.2
36.3
Major BPS
58.7
0.22
1.2
67
38
Major PPT
87.5
0.84
0.7
80
32
Minor 5ss
31.5
-2.1
2.4
34.9
40.7
Minor BPS
44.7
-0.4
2
56.96
41.6

Associated Gene:

Gene:
AP1M1
Ensembl Gene ID:
ENSAPLG00000009067
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009484
3048359 - 3056957
8599