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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3085245_3085453_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3085245 - 3085453
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
CTTTCTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
GCGCCGCTAACC
Flanking Amino Acid:
SPCREKALHERWKCDQEAKA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
65.1
40.7
Major BPS
57.1
0.18
1.1
59
36
Major PPT
81.2
0.7
0.7
73.4
31.5
Minor 5ss
30.8
-2.2
2.8
34
34.7
Minor BPS
44
-0.4
2.3
53.23
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009602
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009992
3085170 - 3086961
1792