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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3086346_3086785_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3086346 - 3086785
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
ATTTCTCCAACA
Flanking Amino Acid:
HLKAHLRTHTGEKPYHCNWE
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
75.8
0.58
0.9
71.1
34
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
58.5
0.26
1.9
75.04
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009602
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009992
3085170 - 3086961
1792