About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3127139_3128451_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
3127139 - 3128451

Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTAAGTATG

5'SS Class:
strong_major

3'SS Sequence:
ATAATTGTTGTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTATCATAATT

Flanking Amino Acid:
SKLPLDILGRVWDLSDIDKD

Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
87.9
0.89
0.9
81.8
38.5

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
68.7
0.42
1
62.6
43.3

Minor 5ss
38.9
-1.2
2.8
43.3
43.8

Minor BPS
66.7
0.6
1.6
85.4
34.6

Associated Gene:

Gene:
EPS15L1

Ensembl Gene ID:

Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3099341 - 3136491
37151

3099341 - 3136491
37151