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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3131672_3136461_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3131672 - 3136461
Intron Length:
4790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCGGC
5'SS Class:
major
3'SS Sequence:
TCCTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCATTCTTCATT
Flanking Amino Acid:
MAALIPLSQQFSTGNPLYET
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
61.5
44.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.9
0.81
0.8
83.8
30.8
Minor 5ss
42.2
-0.9
3.3
59.3
45.5
Minor BPS
61.1
0.43
1.7
75.74
41.7

Associated Gene:

Gene:
EPS15L1
Ensembl Gene ID:
ENSAPLG00000009655
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035468
3099341 - 3136491
37151
ENSAPLT00000010133
3099341 - 3136491
37151