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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3139225_3139314_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3139225 - 3139314
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATAAATA
5'SS Class:
weak_major
3'SS Sequence:
CGGTTTATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
CTTTCCCTGACT
Flanking Amino Acid:
YPMIKNPLYRGEWQPRQIDN
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.1
60.5
38.2
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
66.6
0.37
0.9
58.6
41.8
Minor 5ss
43.8
-0.7
3
53.5
44.7
Minor BPS
71.8
0.77
1.7
88.28
36.8

Associated Gene:

Gene:
CALR3
Ensembl Gene ID:
ENSAPLG00000010728
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011163
3137992 - 3141903
3912