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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3141410_3141561_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3141410 - 3141561
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTATCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTTATTCTAATT
Flanking Amino Acid:
KFYGDPVRDKGLQTSENSKF
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
64.9
41.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.6
0.75
0.8
76.9
36.6
Minor 5ss
32.7
-2
3.1
40.1
46
Minor BPS
54.6
0.22
1.7
73.62
37.4

Associated Gene:

Gene:
CALR3
Ensembl Gene ID:
ENSAPLG00000010728
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011163
3137992 - 3141903
3912