Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3141667_3141779_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3141667 - 3141779

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTGTGGGC

5'SS Class:

weak_major

3'SS Sequence:

CCCGGCGGGGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTACCAC

U12 Branch Point Sequence:

GTGCTGGTACCA

Flanking Amino Acid:

VYFQEQFLDGAGWQKRWVHS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.4

0.13

1.3

49.6

41.4

Major BPS

45.2

-0.3

1.4

52.5

42.7

Major PPT

48.8

-0

1.1

38.3

Minor 5ss

24.6

-2.9

3.4

33.3

Minor BPS

36.6

-1

2.5

48.37

42.4

Associated Gene:

Gene:

CALR3

Ensembl Gene ID:

ENSAPLG00000010728

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011163

3137992 - 3141903

3912