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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3143739_3144003_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3143739 - 3144003
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CACTCAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGTCACTCAATT
Flanking Amino Acid:
AEDSTSISSNDFRLNILSLD
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
70.4
0.46
0.9
62.7
37
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
57.1
0.3
1.7
76.16
40

Associated Gene:

Gene:
C19orf44
Ensembl Gene ID:
ENSAPLG00000010741
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011177
3142283 - 3145948
3666