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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3144917_3145101_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3144917 - 3145101
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
ATCCTATACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AACCCTGTAACT
Flanking Amino Acid:
DSPFTYCWSKTNNTAVLGPP
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.4
35.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
67.9
0.4
0.9
61.8
37.5
Minor 5ss
41.8
-0.9
2.7
47.2
42.3
Minor BPS
50.9
0.11
2
68.76
42.1

Associated Gene:

Gene:
C19orf44
Ensembl Gene ID:
ENSAPLG00000010741
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011177
3142283 - 3145948
3666