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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3147182_3148394_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3147182 - 3148394
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTCTCTCAAAA
Flanking Amino Acid:
FIARMKARDEC*
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.9
0.45
1
72.4
31.3
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
61.2
0.35
1.6
74.5
36.4

Associated Gene:

Gene:
CHERP
Ensembl Gene ID:
ENSAPLG00000010773
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011255
3147177 - 3159345
12169