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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3148581_3149125_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3148581 - 3149125
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
AGGTACAGGATT
Flanking Amino Acid:
NKGHQMLVKMGWSGSGGLGA
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70
37.3
Major BPS
57
0.17
0.9
65
30.8
Major PPT
78.7
0.65
0.8
72.7
32
Minor 5ss
36.6
-1.5
3.3
41.5
45.4
Minor BPS
42.6
-0.5
1.8
56.91
39.3

Associated Gene:

Gene:
CHERP
Ensembl Gene ID:
ENSAPLG00000010773
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011255
3147177 - 3159345
12169