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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3150110_3150446_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3150110 - 3150446
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCACTGGAGT
Flanking Amino Acid:
RRRKGQEKRNSGPSRSRSRS
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
81.5
0.71
0.9
77.1
37.1
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
48.9
-0
2
74.88
41.5

Associated Gene:

Gene:
CHERP
Ensembl Gene ID:
ENSAPLG00000010773
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011255
3147177 - 3159345
12169