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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3150534_3150816_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3150534 - 3150816
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GTGTGGTTGATT
Flanking Amino Acid:
SPPSHDRPRNSEGWEQNGLY
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
79.9
0.67
0.9
74.2
40
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
46.2
-0.2
2.4
67.07
44.5

Associated Gene:

Gene:
CHERP
Ensembl Gene ID:
ENSAPLG00000010773
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011255
3147177 - 3159345
12169