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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3157534_3158312_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3157534 - 3158312
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTAATT
Flanking Amino Acid:
QEQHLLAMRQEQVTSAVALA
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
68.2
42.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
31.3
-2.1
3.3
40.4
45.9
Minor BPS
70
0.71
1.5
85.64
34.4

Associated Gene:

Gene:
CHERP
Ensembl Gene ID:
ENSAPLG00000010773
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011255
3147177 - 3159345
12169