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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3159205_3159320_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3159205 - 3159320
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TGCCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGCCTCCCCACA
Flanking Amino Acid:
MEMPLPPDDQELRNVIDK
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57.1
42.2
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
71.7
0.49
0.8
64.9
30.9
Minor 5ss
31.7
-2.1
3.3
39.7
45.8
Minor BPS
39.9
-0.8
2.1
50.19
40.7

Associated Gene:

Gene:
CHERP
Ensembl Gene ID:
ENSAPLG00000010773
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011255
3147177 - 3159345
12169