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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3174244_3176019_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3174244 - 3176019
Intron Length:
1776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTTTTTAAAA
Flanking Amino Acid:
KYPITKEALEETRLGRLINE
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.7
0.85
0.7
81.5
35.9
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
63.2
0.41
1.4
67.43
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011240
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011692
3172549 - 3178894
6346