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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3204155_3204840_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3204155 - 3204840
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACACCT
5'SS Class:
major
3'SS Sequence:
TATTGTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
FIMMATGWVKGSGVALMSNF
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.1
40.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.7
0.71
0.9
76.1
37.6
Minor 5ss
34.7
-1.7
3.2
49.1
46.6
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
TMEM38A
Ensembl Gene ID:
ENSAPLG00000024207
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025000
3201042 - 3205984
4943