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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3204929_3205043_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3204929 - 3205043
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
ATTTCTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGTTCTTTATTT
Flanking Amino Acid:
PETNEILHMSFPTKASLYGT
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
70.9
39.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.1
0.72
0.8
74.5
35.7
Minor 5ss
38.7
-1.3
2.8
51.8
39.1
Minor BPS
65.9
0.58
1.5
78.88
37.7

Associated Gene:

Gene:
TMEM38A
Ensembl Gene ID:
ENSAPLG00000024207
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025000
3201042 - 3205984
4943