Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3205162_3205768_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3205162 - 3205768

Intron Length:

607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TGTTGTGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

AGGTTTTTAACT

Flanking Amino Acid:

FFTMFMIVCKVFMTATHSHA

Intron Amino Acid Position:

225

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.5

1.07

0.7

84.1

30.2

Major BPS

87.3

0.93

0.8

36.5

Major PPT

69.4

0.44

1.1

65.2

45.5

Minor 5ss

39.6

-1.2

2.8

49.9

46.3

Minor BPS

71.8

0.76

1.2

78.41

Associated Gene:

Gene:

TMEM38A

Ensembl Gene ID:

ENSAPLG00000024207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025000

3201042 - 3205984

4943