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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3227768_3228154_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3227768 - 3228154
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
CATACTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTGCATCTAACA
Flanking Amino Acid:
SFLEILHTYQKEQLNTKGRP
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
79.3
0.66
0.9
72.8
36.9
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
50.2
0
1.8
66.66
39.4

Associated Gene:

Gene:
SIN3B
Ensembl Gene ID:
ENSAPLG00000011724
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012275
3225583 - 3236944
11362