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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3228299_3228522_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3228299 - 3228522
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GATTATTTATTT
Flanking Amino Acid:
QFLPEAKRSLFTGNGPCEVN
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75.9
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.1
0.9
0.7
89.2
27.5
Minor 5ss
42.5
-0.8
3.1
54.4
45.2
Minor BPS
53.4
0.19
1.7
70.83
40.2

Associated Gene:

Gene:
SIN3B
Ensembl Gene ID:
ENSAPLG00000011724
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012275
3225583 - 3236944
11362