About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3231524_3231883_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3231524 - 3231883
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTCTG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTCTTAACA
Flanking Amino Acid:
LHRCEDERFELDVVLETNLA
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
63.8
47.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.1
0.77
0.8
80.8
29.7
Minor 5ss
42.3
-0.9
3.1
58.7
45.8
Minor BPS
85.3
1.1
1
86.69
32.1

Associated Gene:

Gene:
SIN3B
Ensembl Gene ID:
ENSAPLG00000011724
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012275
3225583 - 3236944
11362