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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3235935_3236090_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3235935 - 3236090
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
GFLLKPVFLQRNLKKFRKWQ
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
SIN3B
Ensembl Gene ID:
ENSAPLG00000011724
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012275
3225583 - 3236944
11362