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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3236296_3236630_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3236296 - 3236630
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCTC
5'SS Class:
major
3'SS Sequence:
GTCCTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TGATCTTTACTG
Flanking Amino Acid:
RRGALCRAKQVQPMVLLKHH
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
69.7
41.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
76.8
0.6
0.9
72.8
37.5
Minor 5ss
37.1
-1.5
3.3
52.9
44.2
Minor BPS
57.3
0.09
1.7
60.56
41.8

Associated Gene:

Gene:
SIN3B
Ensembl Gene ID:
ENSAPLG00000011724
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012275
3225583 - 3236944
11362