About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3291067_3291234_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3291067 - 3291234
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
AAACACTGTGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTTCTAAAT
Flanking Amino Acid:
FKPGLPYKGKVEVTYPDGSP
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
55
0.11
1
47.7
40.1
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
58
0.33
1.7
78.38
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012206
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012747
3284500 - 3297707
13208