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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3292028_3292322_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3292028 - 3292322
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTATCT
Flanking Amino Acid:
SKCEKGTVHARYTFGKPVTG
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.6
0.78
0.8
81.8
28.5
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
67.2
0.62
1.9
86.85
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012206
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012747
3284500 - 3297707
13208