About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3294912_3295055_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3294912 - 3295055
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GAACAATTAATT
Flanking Amino Acid:
DKPVYKPKQKVLINLFMVTS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.5
0.8
0.6
84.8
22.9
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
48.5
-0
1.7
63.44
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012206
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012747
3284500 - 3297707
13208