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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3296085_3297338_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3296085 - 3297338
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTCTCTTTCATT
Flanking Amino Acid:
TVSRGHGTILDKGTIKLKVP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
34.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.5
0.75
0.7
82.2
28.1
Minor 5ss
35.6
-1.6
2.8
36.8
40.4
Minor BPS
60.1
0.4
1.8
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012206
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012747
3284500 - 3297707
13208