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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3297491_3297660_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3297491 - 3297660
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGTCACA
5'SS Class:
weak_major
3'SS Sequence:
TCTTGCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTGTTCTTGATG
Flanking Amino Acid:
LWKLDTGLHCWGYLIAAPSV
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58
0.19
1.1
53.1
39.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
75.4
0.57
0.8
73.7
31.4
Minor 5ss
33
-1.9
3.1
37.5
42
Minor BPS
62.2
0.24
1.4
61.06
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012206
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012747
3284500 - 3297707
13208