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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_330158_331234_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
330158 - 331234
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGATCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGATTTGTAAAT
Flanking Amino Acid:
IKDINTLEPLKKLPNLHSLD
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.7
0.74
0.9
77.2
36.9
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
49.2
0.02
2.1
70.2
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003609
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003692
326235 - 331501
5267