About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3311148_3311239_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3311148 - 3311239
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTAAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATCTCTTAAAT
Flanking Amino Acid:
HIEGDKPTYLDEMQKQLTIT
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.6
0.53
0.9
67.5
37.6
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
67.7
0.63
1.4
78.58
36.6

Associated Gene:

Gene:
HAUS8
Ensembl Gene ID:
ENSAPLG00000012957
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013499
3310155 - 3315742
5588