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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3315239_3315533_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3315239 - 3315533
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCGGG
5'SS Class:
major
3'SS Sequence:
TTTTGATTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTGATA
Flanking Amino Acid:
LQYEKKDPKKDTTATSFSKS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
51
45.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
72.9
0.52
1
69.6
40.7
Minor 5ss
34.7
-1.7
3.5
47.5
47.9
Minor BPS
56.3
0.19
2
75.33
36.1

Associated Gene:

Gene:
HAUS8
Ensembl Gene ID:
ENSAPLG00000012957
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013499
3310155 - 3315742
5588