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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3327177_3335366_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3327177 - 3335366
Intron Length:
8190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGCTTTATT
Flanking Amino Acid:
TILGAGPVLEAFGNAKTAHN
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.5
0.73
0.9
76.7
36.2
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
65.1
0.56
2.1
87.87
37.8

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464