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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3335462_3337328_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3335462 - 3337328
Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GGGATCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
VNYLENGIVRGAVVEKYLLE
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
63.5
0.3
1
59.1
42.8
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464