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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3337876_3338103_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3337876 - 3338103
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATAAAAT
Flanking Amino Acid:
MVGFLSSTKKQIFSVLSAIL
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.2
0.79
0.6
85.4
21.9
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
49.7
0.06
2
73.71
43.1

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464