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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3338234_3338703_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3338234 - 3338703
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
ACTTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTGGTTTTACTT
Flanking Amino Acid:
VLDILSQLLKVKREILVEVL
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.1
62.7
38.4
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
71.3
0.48
1.1
71.4
38
Minor 5ss
38.1
-1.3
3.7
53.9
45.1
Minor BPS
52.8
0.17
1.7
70.08
42.4

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464