About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3338794_3339026_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3338794 - 3339026
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAA
Flanking Amino Acid:
KLILPYSLNEAITARDSMAK
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.6
0.69
0.9
73.6
36
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
70
0.62
1.3
75.65
35.9

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977