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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3339144_3339462_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3339144 - 3339462
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CTCTTCTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
GATTACTTAAAT
Flanking Amino Acid:
NKKDMEESVTCLSIGVLDIF
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
79.7
0.67
0.7
75.6
26.6
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
67.7
0.64
1.6
81.09
39.4

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977