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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3341633_3342029_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3341633 - 3342029
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
AATAGCTGACTT
Flanking Amino Acid:
GLFYLLDEESNFPHATNQTL
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
66
40.1
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
83
0.74
0.8
77.1
37.1
Minor 5ss
39.9
-1.1
3.1
51.2
39.7
Minor BPS
43.9
-0.3
2
61.26
42.5

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464